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point clouds", "topics": [ "fastKmeans" ] }, { "page": "ply2mesh", "title": "Import 3D surface mesh files", "topics": [ "file2mesh", "obj2mesh", "ply2mesh" ] }, { "page": "find.outliers", "title": "Graphical interface to find outliers and/or to switch mislabeld landmarks", "topics": [ "find.outliers" ] }, { "page": "fixLMmirror", "title": "estimate missing landmarks from their bilateral counterparts", "topics": [ "fixLMmirror", "fixLMmirror.array", "fixLMmirror.matrix" ] }, { "page": "fixLMtps", "title": "estimate missing landmarks", "topics": [ "fixLMtps" ] }, { "page": "getFaces", "title": "find indices of faces that contain specified vertices", "topics": [ "getFaces" ] }, { "page": "getMeaningfulPCs", "title": "get number of meaningful Principal components", "topics": [ "getMeaningfulPCs" ] }, { "page": "getOuterViewpoints", "title": "Get viewpoints on a sphere around a 3D mesh", "topics": [ "getOuterViewpoints" ] }, { "page": "getPCscores", "title": "Obtain PC-scores for new landmark data", "topics": [ "getPCscores" ] }, { "page": "getPCtol", "title": "determine the minimum ratio for two subsequent eigenvalues to be considered different", "topics": [ "getPCtol" ] }, { "page": "getPLSCommonShape", "title": "Get the linear combinations associated with the common shape change in each latent dimension of a pls2B", "topics": [ "getPLSCommonShape" ] }, { "page": "getPLSfromScores", "title": "compute changes associated with 2-Block PLS-scores", "topics": [ "getPLSfromScores" ] }, { "page": "getPLSscores", "title": "compute 2-Block PLS scores for new data", "topics": [ "getPLSscores" ] }, { "page": "getPointAlongOutline", "title": "Get a point along a line with a given distance from the start of the line", "topics": [ "getPointAlongOutline" ] }, { "page": "getSides", "title": "try to identify bilateral landmarks and sort them by side", "topics": [ "getSides" ] }, { "page": "getTrafo4x4", "title": "get 4x4 Transformation matrix", "topics": [ "getTrafo4x4", 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"inscribeEllipseRot", "title": "Inscribe the maximum ellipse into any arbitrary 2D polygon including rotations", "topics": [ "inscribeEllipseRot" ] }, { "page": "invertFaces", "title": "invert faces' orientation of triangular mesh", "topics": [ "invertFaces" ] }, { "page": "kendalldist", "title": "Calculates the Riemannian distance between two superimposed landmark configs.", "topics": [ "kendalldist" ] }, { "page": "line2plane", "title": "get intersection between a line and a plane", "topics": [ "line2plane" ] }, { "page": "lineplot", "title": "plot lines between landmarks", "topics": [ "lineplot" ] }, { "page": "list2array", "title": "converts a list of matrices to an array", "topics": [ "list2array" ] }, { "page": "LPS2RAS", "title": "convert data from LPS to RAS space and back", "topics": [ "LPS2RAS" ] }, { "page": "mcNNindex", "title": "find nearest neighbours for 2D and 3D point clouds", "topics": [ "mcNNindex" ] }, { "page": "mergeMeshes", "title": "merge multiple triangular meshes into a single one", "topics": [ "mergeMeshes" ] }, { "page": "mesh2grey", "title": "convert a colored mesh to greyscale.", "topics": [ "mesh2grey" ] }, { "page": "mesh2ply", "title": "export mesh objects to disk", "topics": [ "mesh2obj", "mesh2ply" ] }, { "page": "meshcube", "title": "calculate the corners of a mesh's bouning box", "topics": [ "meshcube" ] }, { "page": "meshDist", "title": "calculates and visualises distances between surface meshes or 3D coordinates and a surface mesh.", "topics": [ "meshDist", "meshDist.matrix", "meshDist.mesh3d" ] }, { "page": "meshPlaneIntersect", "title": "get intersections between mesh and a plane", "topics": [ "meshPlaneIntersect" ] }, { "page": "meshres", "title": "calculate average edge length of a triangular mesh", "topics": [ "meshres" ] }, { "page": "mirror", "title": "mirror landmarks or triangular mesh in place", "topics": [ "mirror", "mirror.matrix", "mirror.mesh3d" ] }, { "page": "mirror2plane", "title": "mirror points or mesh on an arbitrary plane", "topics": [ "mirror2plane", "mirror2plane.matrix", "mirror2plane.mesh3d" ] }, { "page": "name2factor", "title": "extract data from array names", "topics": [ "name2factor", "name2num" ] }, { "page": "NNshapeReg", "title": "Estimate the shape by averaging the shape of the nearest neighbours.", "topics": [ "NNshapeReg" ] }, { "page": "nose", "title": "landmarks and a triangular mesh representing a human nose", "topics": [ "longnose.lm", "nose", "shortnose.lm", "shortnose.mesh" ] }, { "page": "pcAlign", "title": "align two 3D-pointclouds/meshes by their principal axes", "topics": [ "pcAlign", "pcAlign.matrix", "pcAlign.mesh3d" ] }, { "page": "pcaplot3d", "title": "visualization of shape variation", "topics": [ "pcaplot3d", "pcaplot3d.nosymproc", "pcaplot3d.symproc" ] }, { "page": "PCdist", "title": "correlation between a reduced space and the original space", "topics": [ "PCdist" ] }, { "page": "permudist", "title": "performs permutation testing for group differences.", "topics": [ "permudist" ] }, { "page": "permuvec", "title": "perfom permutation testing on angles and distances between subgroups of two major groups.", "topics": [ "permuvec" ] }, { "page": "placePatch", "title": "Project semi-landmarks from a predefined atlas onto all specimen in a sample", "topics": [ "placePatch" ] }, { "page": "plot.ILDSR2", "title": "Plot graphical report for ILDSR2", "topics": [ "plot.ILDSR2" ] }, { "page": "plot.slider3d", "title": "plot the result of slider3d", "topics": [ "plot.slider3d" ] }, { "page": "plotAtlas", "title": "visualize an atlas defined by createAtlas", "topics": [ "plotAtlas" ] }, { "page": "plotNormals", "title": "plots the normals of a triangular surface mesh.", "topics": [ "plotNormals" ] }, { "page": "pls2B", "title": "Two-Block partial least square regression.", "topics": [ "pls2B" ] }, { "page": "plsCoVar", "title": "Get the shape changes from pls2B associated with each latent variable", "topics": [ "plsCoVar" ] }, { "page": "plsCoVarCommonShape", "title": "Compute the shape changes along the common axis of deformations", "topics": [ "plsCoVarCommonShape" ] }, { "page": "points2plane", "title": "projects a 3D coordinate orthogonally onto a plane", "topics": [ "points2plane" ] }, { "page": "prcompfast", "title": "fast Principal Component Analysis (PCA)", "topics": [ "prcompfast" ] }, { "page": "predict.bgPCA", "title": "Compute between-group-PC scores from new data", "topics": [ "predict.bgPCA" ] }, { "page": "predict.CVA", "title": "Compute CV-scores from new data", "topics": [ "predict.CVA" ] }, { "page": "predictPLSfromData", "title": "predict 2 Block-PLS from new data", "topics": [ "predictPLSfromData" ] }, { "page": "predictPLSfromScores", "title": "predict data from 2-Block PLS-scores", "topics": [ "predictPLSfromScores" ] }, { "page": "predictRelWarps", "title": "predict relative warps for data not included in the training data set", "topics": [ "predictRelWarps" ] }, { "page": "predictShape.lm", "title": "Predict shapes based on linear models calculated from PCscores", "topics": [ "predictShape.lm" ] }, { "page": "proc.weight", "title": "calculate weights inverse to the distances from the specified observation.", "topics": [ "proc.weight" ] }, { "page": "procAOVsym", "title": "Procrustes ANOVA for structures with object symmetry", "topics": [ "procAOVsym" ] }, { "page": "ProcGPA", "title": "Workhorse function for procSym, responsible for Procrustes registration", "topics": [ "ProcGPA" ] }, { "page": "procSym", "title": "Procrustes registration", "topics": [ "procSym" ] }, { "page": "projRead", "title": "Project points onto the closest point on a mesh", "topics": [ "projRead" ] }, { "page": "pts2meshICP", "title": "Align a landmark configuration to a mesh using ICP", "topics": [ "pts2meshICP" ] }, { "page": "qqmat", "title": "Q-Q plot to assess normality of data", "topics": [ "qqmat" ] }, { "page": "quad2trimesh", "title": "converts a mesh containing 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